Index

_

_add_classifications_from_mso_slot() (polo.widgets.run_tree.RunTree method) _add_image_to_slide() (polo.utils.io_utils.PptxWriter method) _add_images_and_metadata_to_slideshow() (polo.utils.io_utils.PptxWriter method) _add_multi_image_slide() (polo.utils.io_utils.PptxWriter method) _add_multi_spectrum_slide() (polo.utils.io_utils.PptxWriter method) _add_new_slide() (polo.utils.io_utils.PptxWriter method) _add_run_node() (polo.widgets.run_tree.RunTree method) _add_runs_to_tree() (polo.widgets.run_organizer.RunOrganizer method) _add_single_image_slide() (polo.utils.io_utils.PptxWriter method) _add_text_to_scene() (polo.widgets.slideshow_viewer.SlideshowViewer method) _add_text_to_slide() (polo.utils.io_utils.PptxWriter method) _add_timeline_slide() (polo.utils.io_utils.PptxWriter method) _apply_color_mapping() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _apply_image_filters() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _assign_checkboxes_to_class() (polo.widgets.table_inspector.TableInspector method) _block_size() (polo.widgets.plate_visualizer.PlateVisualizer method) _browse_and_update_line_edit() (polo.windows.pptx_dialog.PptxDesignerDialog method) _change_favorite_status() (polo.windows.image_pop_dialog.ImagePopDialog method) _check_current_run_for_missing_images() (polo.windows.main_window.MainWindow method) _check_for_existing_backup() (polo.widgets.run_organizer.RunOrganizer method) _check_for_new_version() (polo.windows.main_window.MainWindow method) _check_for_overflow() (polo.widgets.optimize_widget.OptimizeWidget method) _classification_cleanup() (polo.widgets.run_organizer.RunOrganizer method) _classify_all_runs_slot() (polo.widgets.run_tree.RunTree method) _classify_image() (polo.widgets.slideshow_inspector.slideshowInspector method) _classify_multiple_runs() (polo.widgets.run_organizer.RunOrganizer method) _clear_current_run() (polo.widgets.run_organizer.RunOrganizer method) _close_dialog() (polo.windows.run_importer.RunImporterDialog method) _collect_writable_image_indicies() (polo.utils.io_utils.XtalToImages method) _could_not_import_message() (polo.windows.run_importer.RunImporterDialog method) _delete_presentation() (polo.utils.io_utils.PptxWriter method) _delete_temp_images() (polo.utils.io_utils.PptxWriter method) _disable_hwi_import_tools() (polo.windows.run_importer.RunImporterDialog method) _display_candidate_paths() (polo.windows.run_importer.RunImporterDialog method) _display_cocktail_files() (polo.windows.run_importer.RunImporterDialog method) _display_current_image() (polo.widgets.slideshow_inspector.slideshowInspector method) _display_name_setter() (polo.widgets.run_tree.RunTree method) _edit_data_slot() (polo.widgets.run_tree.RunTree method) _enable_hwi_import_tools() (polo.windows.run_importer.RunImporterDialog method) _error_checker() (polo.widgets.optimize_widget.OptimizeWidget method) _export_screen() (polo.widgets.optimize_widget.OptimizeWidget method) _finished_ftp_download() (polo.widgets.run_organizer.RunOrganizer method) _get_images_from_auto_entry() (polo.windows.pptx_dialog.PptxDesignerDialog method) _get_images_from_manual_entry() (polo.windows.pptx_dialog.PptxDesignerDialog method) _get_run_node() (polo.widgets.run_tree.RunTree method) _get_save_path() (polo.windows.pptx_dialog.PptxDesignerDialog method) _get_visible_wells() (polo.widgets.plate_viewer.plateViewer method) _gradient() (polo.widgets.optimize_widget.OptimizeWidget method) _handle_block_selection() (polo.widgets.plate_visualizer.PlateVisualizer method) _handle_candidate_change() (polo.windows.run_importer.RunImporterDialog method) _handle_citation_menu() (polo.windows.main_window.MainWindow method) _handle_classification_request() (polo.widgets.run_organizer.RunOrganizer method) _handle_delete_backups() (polo.windows.main_window.MainWindow method) _handle_export() (polo.windows.main_window.MainWindow method) _handle_file_menu() (polo.windows.main_window.MainWindow method) _handle_ftp_download() (polo.widgets.run_organizer.RunOrganizer method) _handle_help_menu() (polo.windows.main_window.MainWindow method) _handle_image_import() (polo.windows.main_window.MainWindow method) _handle_opening_run() (polo.widgets.run_organizer.RunOrganizer method) (polo.windows.main_window.MainWindow method) _handle_plot_selection() (polo.windows.main_window.MainWindow method) _handle_reagent_change() (polo.widgets.optimize_widget.OptimizeWidget method) _handle_recent_import() (polo.windows.main_window.MainWindow method) _handle_tool_menu() (polo.windows.main_window.MainWindow method) _highlight_block() (polo.widgets.plate_visualizer.PlateVisualizer method) _import_files() (polo.windows.run_importer.RunImporterDialog method) _import_runs() (polo.widgets.run_organizer.RunOrganizer method) _make_header_map() (polo.widgets.table_viewer.TableViewer method) _make_image_label() (polo.widgets.plate_viewer.plateViewer method) _make_plate_list() (polo.widgets.optimize_widget.OptimizeWidget method) _make_well_html() (polo.widgets.optimize_widget.OptimizeWidget method) _MapBox__init() (polo.widgets.map_box.MapBox method) _mark_current_image_as_favorite() (polo.widgets.slideshow_inspector.slideshowInspector method) _metadata_from_images() (polo.utils.io_utils.PptxWriter method)

_navigate_carousel() (polo.widgets.slideshow_inspector.slideshowInspector method) _on_changed_tab() (polo.windows.main_window.MainWindow method) _open_browser() (polo.windows.run_importer.RunImporterDialog method) _open_classification_thread() (polo.widgets.run_organizer.RunOrganizer method) _open_run_slot() (polo.widgets.run_tree.RunTree method) _parse_image_classifications() (polo.windows.pptx_dialog.PptxDesignerDialog method) _parse_label_checkboxes() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _parse_manual_image_entry() (polo.windows.pptx_dialog.PptxDesignerDialog method) _plot_limiter() (polo.windows.main_window.MainWindow method) _populate_fields() (polo.windows.run_importer.RunImporterDialog method) _read_recent_imports() (polo.windows.main_window.MainWindow method) _remove_run() (polo.windows.run_importer.RunImporterDialog method) _remove_run_slot() (polo.widgets.run_tree.RunTree method) _save_file_dialog() (polo.windows.main_window.MainWindow method) _select_images() (polo.utils.io_utils.PptxWriter method) _select_run_menu() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _set_all_dates_scene() (polo.widgets.slideshow_viewer.SlideshowViewer method) _set_all_spectrums_scene() (polo.widgets.slideshow_viewer.SlideshowViewer method) _set_allowed_navigation_functions() (polo.windows.image_pop_dialog.ImagePopDialog method) _set_alt_image() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_alt_spectrum_buttons() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) (polo.widgets.slideshow_inspector.slideshowInspector method) _set_classification_button_labels() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_cocktail_details() (polo.windows.image_pop_dialog.ImagePopDialog method) _set_cocktail_menu() (polo.windows.run_importer.RunImporterDialog method) (polo.windows.run_updater_dialog.RunUpdaterDialog method) _set_cocktail_menu_type_radiobuttons() (polo.windows.run_importer.RunImporterDialog method) _set_color_comboboxs() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_color_options() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_column_options() (polo.widgets.table_inspector.TableInspector method) _set_constant_reagents() (polo.widgets.optimize_widget.OptimizeWidget method) _set_current_page() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_estimated_classification_time() (polo.widgets.run_organizer.RunOrganizer method) _set_favorite_checkbox() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_groupbox_title() (polo.windows.image_pop_dialog.ImagePopDialog method) _set_hit_well_choices() (polo.widgets.optimize_widget.OptimizeWidget method) _set_image_class_checkbox_labels() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_image_count_options() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_image_details() (polo.windows.image_pop_dialog.ImagePopDialog method) _set_image_name() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_image_spectrum() (polo.windows.run_importer.RunImporterDialog method) _set_images_per_page() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_plate_label() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_prerender_info() (polo.widgets.plate_viewer.plateViewer method) _set_progress_value() (polo.widgets.run_organizer.RunOrganizer method) _set_reagent_choices() (polo.widgets.optimize_widget.OptimizeWidget method) _set_reagent_stock_con() (polo.widgets.optimize_widget.OptimizeWidget method) _set_reagent_stock_con_values() (polo.widgets.optimize_widget.OptimizeWidget method) _set_run_date() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _set_single_image_scene() (polo.widgets.slideshow_viewer.SlideshowViewer method) _set_slide_number_label() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_slideshow_mode() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_spin_box_range() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_tab_icons() (polo.windows.main_window.MainWindow method) _set_time_resolved_buttons() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) _set_time_resolved_functions() (polo.widgets.slideshow_inspector.slideshowInspector method) _set_unit_combobox_text() (polo.widgets.unit_combo.UnitComboBox method) _set_up_image_classification_checkboxes() (polo.windows.pptx_dialog.PptxDesignerDialog method) _set_up_unit_comboboxes() (polo.widgets.optimize_widget.OptimizeWidget method) _show_image_from_well_number() (polo.widgets.slideshow_inspector.slideshowInspector method) _submit_filters() (polo.widgets.slideshow_inspector.slideshowInspector method) _tab_limiter() (polo.windows.main_window.MainWindow method) _target_is_valid() (polo.utils.io_utils.RunImporter method) _update_candidate_run_data() (polo.windows.run_importer.RunImporterDialog method) _update_current_reagents() (polo.widgets.optimize_widget.OptimizeWidget method) _update_date() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _update_plate_id() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _update_run() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _update_run_cocktail_menu() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _update_spectrum() (polo.windows.run_updater_dialog.RunUpdaterDialog method) _validate_typed_path() (polo.windows.pptx_dialog.PptxDesignerDialog method) _verify_run_name() (polo.windows.run_importer.RunImporterDialog method) _write_optimization_screen() (polo.widgets.optimize_widget.OptimizeWidget method) _write_presentation() (polo.windows.pptx_dialog.PptxDesignerDialog method)

A

add_classified_run() (polo.widgets.run_tree.RunTree method) add_cocktail_slide() (polo.utils.io_utils.PptxWriter method) add_images_from_dir() (polo.crystallography.run.HWIRun method) (polo.crystallography.run.Run method) add_menus_from_metadata() (polo.utils.io_utils.BarTender method) add_pixmap() (polo.widgets.slideshow_viewer.PhotoViewer method) add_reagent() (polo.crystallography.cocktail.Cocktail method) add_run_to_tree() (polo.widgets.run_tree.RunTree method) add_sample() (polo.widgets.run_tree.RunTree method) add_slides() (polo.widgets.slideshow_viewer.Carousel method) add_table_to_slide() (polo.utils.io_utils.PptxWriter method)

adjust_unit() (polo.widgets.optimize_widget.OptimizeWidget method) all_dates() (polo.windows.pptx_dialog.PptxDesignerDialog property) all_run_names() (polo.windows.run_importer.RunImporterDialog property) all_runs() (polo.widgets.run_organizer.RunOrganizer property) all_specs() (polo.windows.pptx_dialog.PptxDesignerDialog property) allowed_filetypes (polo.utils.io_utils.RunImporter attribute) AllOWED_PLOTS (polo.crystallography.run.HWIRun attribute) (polo.crystallography.run.Run attribute) apply_plate_settings() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) arrange_multi_image_scene() (polo.widgets.slideshow_viewer.SlideshowViewer method) aspect_ratio() (polo.widgets.plate_viewer.plateViewer property) auto_detect_time_links() (polo.windows.time_res_dialog.TimeResDialog method)

B

backup_classifications() (polo.widgets.run_organizer.RunOrganizer method) backup_classifications_on_thread() (polo.widgets.run_organizer.RunOrganizer method) BAR_COLORS (polo.windows.main_window.MainWindow attribute)

BarTender (class in polo.utils.io_utils) best_aspect_ratio() (in module polo.utils.math_utils) bites() (polo.crystallography.image.Image property) block_dims() (polo.widgets.plate_visualizer.PlateVisualizer static method)

C

Carousel (class in polo.widgets.slideshow_viewer) carousel_controls() (polo.widgets.slideshow_viewer.SlideshowViewer method) catch_ftp_errors() (in module polo.utils.ftp_utils) change_value (polo.threads.thread.ClassificationThread attribute) changed_images_per_page_signal (polo.widgets.plate_viewer.plateViewer attribute) changed_page_signal (polo.widgets.plate_viewer.plateViewer attribute) check_for_missing_images() (in module polo.utils.io_utils) check_for_warnings() (polo.windows.pptx_dialog.PptxDesignerDialog method) chemical_formula() (polo.crystallography.cocktail.Reagent property) ClassificationThread (class in polo.threads.thread) classify_current_image() (polo.widgets.slideshow_viewer.SlideshowViewer method) classify_image() (polo.crystallography.image.Image method) (polo.windows.image_pop_dialog.ImagePopDialog method) classify_images_from_mso_file() (polo.utils.io_utils.MsoReader method) classify_run (polo.widgets.run_organizer.RunOrganizer attribute) classify_sample_signal (polo.widgets.run_tree.RunTree attribute) clean_base64_string() (polo.crystallography.image.Image static method) (polo.utils.io_utils.RunDeserializer static method) clean_run_for_save() (polo.utils.io_utils.XtalWriter static method) clear_log() (polo.windows.log_dialog.LogDialog method) closeEvent() (polo.windows.main_window.MainWindow method) Cocktail (class in polo.crystallography.cocktail)

cocktail_index() (polo.crystallography.cocktail.Cocktail property) cocktail_map (polo.utils.io_utils.CocktailMenuReader attribute) CocktailMenuReader (class in polo.utils.io_utils) cocktails() (polo.utils.io_utils.Menu property) color_mapping() (polo.widgets.plate_inspector_widget.PlateInspectorWidget property) concentration() (polo.crystallography.cocktail.Reagent property) connect_ftp() (polo.windows.ftp_dialog.FTPDialog method) connected() (polo.windows.ftp_dialog.FTPDialog property) CONNECTED_ICON (polo.windows.ftp_dialog.FTPDialog attribute) constant_reagents() (polo.widgets.optimize_widget.OptimizeWidget property) contextMenuEvent() (polo.widgets.plate_viewer.PlateGraphicsItem method) (polo.widgets.run_tree.RunTree method) controls() (polo.widgets.slideshow_viewer.Carousel method) crack_open_a_rar_one() (polo.utils.io_utils.RunImporter static method) create_import_thread() (polo.utils.io_utils.RunImporter method) current_image() (polo.widgets.slideshow_inspector.slideshowInspector property) current_menus() (polo.windows.run_updater_dialog.RunUpdaterDialog property) current_page() (polo.widgets.plate_viewer.plateViewer property) current_run_names() (polo.widgets.run_tree.RunTree property) current_slide() (polo.widgets.slideshow_viewer.Carousel property) current_slide_number() (polo.widgets.slideshow_viewer.SlideshowViewer property) current_sort_function() (polo.widgets.slideshow_inspector.slideshowInspector property) current_value() (polo.widgets.map_box.MapBox method)

D

DATA_INDEX (polo.widgets.file_browser.fileBrowser attribute) date() (polo.crystallography.image.Image property) date_range_parser() (polo.utils.io_utils.BarTender static method) datetime_converter() (polo.utils.io_utils.BarTender static method) decolor_all_images() (polo.widgets.plate_viewer.plateViewer method) default_brush (polo.widgets.plate_visualizer.PlateVisualizer attribute) default_pen (polo.widgets.plate_visualizer.PlateVisualizer attribute) delete_all_backups() (polo.windows.main_window.MainWindow static method) delete_all_pixmap_data() (polo.crystallography.image.Image method) delete_pixmap_data() (polo.crystallography.image.Image method) dict_to_obj() (polo.utils.io_utils.RunDeserializer static method) DIR_ICON (polo.widgets.file_browser.fileBrowser attribute) directory_validator() (in module polo.utils.io_utils) DISCONNECTED_ICON (polo.windows.ftp_dialog.FTPDialog attribute)

display_current_image() (polo.widgets.slideshow_viewer.SlideshowViewer method) display_log_text() (polo.windows.log_dialog.LogDialog method) display_runs() (polo.windows.time_res_dialog.TimeResDialog method) display_suggestion() (polo.windows.spectrum_dialog.SpectrumDialog method) DOWNLOAD_ICON (polo.windows.ftp_dialog.FTPDialog attribute) download_path (polo.threads.thread.FTPDownloadThread attribute) download_selected_files() (polo.windows.ftp_dialog.FTPDialog method) dragEnterEvent() (polo.widgets.run_tree.RunTree method) (polo.windows.run_importer.RunImporterDialog method) dragMoveEvent() (polo.widgets.run_tree.RunTree method) (polo.windows.run_importer.RunImporterDialog method) dropEvent() (polo.widgets.run_tree.RunTree method) (polo.windows.run_importer.RunImporterDialog method) dropped_links_signal (polo.widgets.run_tree.RunTree attribute)

E

earliest_crystallization_date() (polo.crystallography.image.Image property) emphasize_all_images() (polo.widgets.plate_viewer.plateViewer method) EmptyDirectoryError EmptyRunNameError encode_base64() (polo.crystallography.image.Image method)

encode_bytes() (polo.crystallography.image.Image method) encode_images_to_base64() (polo.crystallography.run.Run method) estimated_time (polo.threads.thread.ClassificationThread attribute) export_current_view() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) (polo.widgets.plate_viewer.plateViewer method) (polo.widgets.slideshow_inspector.slideshowInspector method)

F

factors() (in module polo.utils.math_utils) favorite() (polo.widgets.plate_inspector_widget.PlateInspectorWidget property) (polo.windows.pptx_dialog.PptxDesignerDialog property) favorites() (polo.widgets.slideshow_inspector.slideshowInspector property) fieldnames() (polo.utils.io_utils.RunCsvWriter property) (polo.widgets.table_viewer.TableViewer property) file_downloaded (polo.threads.thread.FTPDownloadThread attribute) file_ext (polo.utils.io_utils.XtalWriter attribute) FILE_ICON (polo.widgets.file_browser.fileBrowser attribute) fileBrowser (class in polo.widgets.file_browser) filter() (polo.widgets.table_viewer.TableViewer static method)

finished_save() (polo.utils.io_utils.XtalWriter method) first_line() (polo.utils.io_utils.MsoWriter property) fitInView() (polo.widgets.plate_viewer.plateViewer method) (polo.widgets.slideshow_viewer.PhotoViewer method) ForbiddenImageTypeError formated_date() (polo.crystallography.image.Image property) formated_name() (polo.crystallography.run.Run property) formula_pos (polo.utils.io_utils.CocktailMenuReader attribute) ftp_download_status (polo.widgets.run_organizer.RunOrganizer attribute) FTPDialog (class in polo.windows.ftp_dialog) FTPDownloadThread (class in polo.threads.thread)

G

get_cell_image_dims() (in module polo.utils.math_utils) get_checked_files() (polo.widgets.file_browser.fileBrowser method) get_cocktail_csv_data() (polo.utils.io_utils.MsoWriter method) get_csv_data() (polo.utils.io_utils.RunCsvWriter method) get_cur_img_cocktail_str() (polo.widgets.slideshow_viewer.SlideshowViewer method) get_cur_img_meta_str() (polo.widgets.slideshow_viewer.SlideshowViewer method) get_current_hits() (polo.crystallography.run.Run method) get_data_from_xml_element() (polo.utils.io_utils.XmlReader static method) get_HWI_runs() (polo.windows.time_res_dialog.TimeResDialog method) get_image_cell_size() (in module polo.utils.math_utils) get_images_by_classification() (polo.crystallography.run.Run method) get_linked_alt_runs() (polo.crystallography.run.HWIRun method) get_linked_date_runs() (polo.crystallography.run.HWIRun method) get_linked_images_by_date() (polo.crystallography.image.Image method)

get_linked_images_by_spectrum() (polo.crystallography.image.Image method) get_menu_by_basename() (polo.utils.io_utils.BarTender method) get_menu_by_date() (polo.utils.io_utils.BarTender method) get_menu_by_path() (polo.utils.io_utils.BarTender method) get_menus_by_type() (polo.utils.io_utils.BarTender method) get_selections() (polo.windows.spectrum_dialog.SpectrumDialog method) get_spectrum_list() (polo.windows.spectrum_dialog.SpectrumDialog method) get_tool_tip() (polo.crystallography.image.Image method) get_tooltip() (polo.crystallography.run.HWIRun method) (polo.crystallography.run.Run method) get_value() (polo.widgets.unit_combo.UnitComboBox method) get_widget_dims() (polo.windows.main_window.MainWindow static method) GRID_ICON (polo.widgets.optimize_widget.OptimizeWidget attribute) grow_tree_using_mlsd() (polo.widgets.file_browser.fileBrowser method)

H

hasPhoto() (polo.widgets.slideshow_viewer.PhotoViewer method) header_flag (polo.utils.io_utils.XtalWriter attribute) header_line (polo.utils.io_utils.XtalWriter attribute) height() (polo.crystallography.image.Image method) hit_images() (polo.widgets.optimize_widget.OptimizeWidget property) host() (polo.windows.ftp_dialog.FTPDialog property)

HTML_ICON (polo.widgets.optimize_widget.OptimizeWidget attribute) HtmlWriter (class in polo.utils.io_utils) human() (polo.widgets.plate_inspector_widget.PlateInspectorWidget property) (polo.widgets.slideshow_inspector.slideshowInspector property) (polo.windows.pptx_dialog.PptxDesignerDialog property) HWIRun (class in polo.crystallography.run)

I

if_dir_not_exists_make() (in module polo.utils.io_utils) Image (class in polo.crystallography.image) image() (polo.windows.image_pop_dialog.ImagePopDialog property) image_filter_query() (polo.crystallography.run.Run method) image_to_row() (polo.utils.io_utils.RunCsvWriter class method) ImagePopDialog (class in polo.windows.image_pop_dialog) images_per_page (polo.widgets.plate_inspector_widget.PlateInspectorWidget attribute) images_per_page() (polo.widgets.plate_viewer.plateViewer property) import_priority (polo.crystallography.run.HWIRun attribute) (polo.crystallography.run.Run attribute)

import_run_from_dialog() (polo.widgets.run_organizer.RunOrganizer method) import_run_from_ftp() (polo.widgets.run_organizer.RunOrganizer method) import_saved_runs() (polo.widgets.run_organizer.RunOrganizer method) IncompletePlateError init_from_directory() (polo.crystallography.run.HWIRun class method) (polo.crystallography.run.Run class method) insert_into_alt_spec_chain() (polo.crystallography.run.HWIRun method) InvalidCocktailFile is_placeholder() (polo.crystallography.image.Image property)

J

json_encoder() (polo.utils.io_utils.JsonWriter static method) (polo.utils.io_utils.XtalWriter static method)

JsonWriter (class in polo.utils.io_utils)

L

layout_widget_lister() (polo.windows.main_window.MainWindow static method) link_current_selection() (polo.windows.spectrum_dialog.SpectrumDialog method) link_runs_by_date() (polo.utils.io_utils.RunLinker static method) link_runs_by_spectrum() (polo.utils.io_utils.RunLinker static method) link_sample() (polo.widgets.run_tree.RunTree method)

link_to_alt_spectrum() (polo.crystallography.run.HWIRun method) link_to_next_date() (polo.crystallography.run.HWIRun method) link_visualizer() (polo.utils.io_utils.RunLinker static method) list_dir_abs() (in module polo.utils.io_utils) LogDialog (class in polo.windows.log_dialog) logon() (in module polo.utils.ftp_utils)

M

MainWindow (class in polo.windows.main_window) make_default_logger() (in module polo) make_from_string() (polo.crystallography.cocktail.UnitValue class method) make_message_box() (in module polo.utils.dialog_utils) make_presentation() (polo.utils.io_utils.PptxWriter method) make_template() (polo.utils.io_utils.HtmlWriter static method) make_thread() (polo.utils.io_utils.RunSerializer class method) make_xtal_file_dialog() (polo.utils.io_utils.RunImporter static method) MapBox (class in polo.widgets.map_box) mapping() (polo.widgets.map_box.MapBox property) marco() (polo.widgets.plate_inspector_widget.PlateInspectorWidget property) (polo.widgets.slideshow_inspector.slideshowInspector property) (polo.windows.pptx_dialog.PptxDesignerDialog property) Menu (class in polo.utils.io_utils) module polo polo.crystallography polo.crystallography.cocktail polo.crystallography.image polo.crystallography.run polo.marco polo.marco.run_marco polo.threads polo.threads.thread polo.utils polo.utils.dialog_utils polo.utils.exceptions polo.utils.ftp_utils polo.utils.io_utils polo.utils.math_utils polo.utils.unrar_utils polo.widgets polo.widgets.file_browser polo.widgets.map_box polo.widgets.optimize_widget polo.widgets.plate_inspector_widget polo.widgets.plate_viewer polo.widgets.plate_visualizer polo.widgets.run_organizer polo.widgets.run_tree polo.widgets.slideshow_inspector polo.widgets.slideshow_viewer polo.widgets.table_inspector polo.widgets.table_viewer polo.widgets.unit_combo polo.windows polo.windows.ftp_dialog polo.windows.image_pop_dialog polo.windows.log_dialog polo.windows.main_window polo.windows.pptx_dialog polo.windows.run_importer polo.windows.run_updater_dialog polo.windows.spectrum_dialog polo.windows.time_res_dialog

molar_mass() (polo.crystallography.cocktail.Reagent property) molarity() (polo.crystallography.cocktail.Reagent property) mousePressEvent() (polo.widgets.slideshow_viewer.PhotoViewer method) mso_version (polo.utils.io_utils.MsoWriter attribute) MsoReader (class in polo.utils.io_utils) MsoWriter (class in polo.utils.io_utils)

N

no_image() (polo.crystallography.image.Image class method)

NotASolutionError NotHWIDirectoryError

O

opening_run (polo.widgets.run_organizer.RunOrganizer attribute) (polo.widgets.run_tree.RunTree attribute)

OptimizeWidget (class in polo.widgets.optimize_widget) output_path() (polo.utils.io_utils.RunCsvWriter property)

P

parse_dirname_metadata() (polo.crystallography.run.HWIRun static method) parse_file_metadata() (polo.crystallography.run.HWIRun static method) parse_hwi_dir_metadata() (in module polo.utils.io_utils) parse_HWI_filename_meta() (in module polo.utils.io_utils) password() (polo.windows.ftp_dialog.FTPDialog property) path() (polo.crystallography.image.Image property) path_suffix_checker() (polo.utils.io_utils.RunSerializer static method) path_validator() (polo.utils.io_utils.RunSerializer static method) peg_parser() (polo.crystallography.cocktail.Reagent method) photoClicked (polo.widgets.slideshow_viewer.PhotoViewer attribute) (polo.widgets.slideshow_viewer.SlideshowViewer attribute) PhotoViewer (class in polo.widgets.slideshow_viewer) plate_size (polo.widgets.plate_visualizer.PlateVisualizer attribute) plate_view_requested (polo.widgets.plate_visualizer.PlateVisualizer attribute) PlateGraphicsItem (class in polo.widgets.plate_viewer) PlateInspectorWidget (class in polo.widgets.plate_inspector_widget) plateViewer (class in polo.widgets.plate_viewer) PlateVisualizer (class in polo.widgets.plate_visualizer) polo module polo.crystallography module polo.crystallography.cocktail module polo.crystallography.image module polo.crystallography.run module polo.marco module polo.marco.run_marco module polo.threads module polo.threads.thread module polo.utils module polo.utils.dialog_utils module polo.utils.exceptions module polo.utils.ftp_utils module polo.utils.io_utils module polo.utils.math_utils module polo.utils.unrar_utils module polo.widgets module

polo.widgets.file_browser module polo.widgets.map_box module polo.widgets.optimize_widget module polo.widgets.plate_inspector_widget module polo.widgets.plate_viewer module polo.widgets.plate_visualizer module polo.widgets.run_organizer module polo.widgets.run_tree module polo.widgets.slideshow_inspector module polo.widgets.slideshow_viewer module polo.widgets.table_inspector module polo.widgets.table_viewer module polo.widgets.unit_combo module polo.windows module polo.windows.ftp_dialog module polo.windows.image_pop_dialog module polo.windows.log_dialog module polo.windows.main_window module polo.windows.pptx_dialog module polo.windows.run_importer module polo.windows.run_updater_dialog module polo.windows.spectrum_dialog module polo.windows.time_res_dialog module pop_out_selected_well() (polo.widgets.plate_viewer.plateViewer method) populate_list_widgets() (polo.windows.spectrum_dialog.SpectrumDialog method) populate_table() (polo.widgets.table_viewer.TableViewer method) PptxDesignerDialog (class in polo.windows.pptx_dialog) PptxWriter (class in polo.utils.io_utils) prediction_dict() (polo.crystallography.image.Image property)

Q

QuickThread (class in polo.threads.thread)

R

read_menu_file() (polo.utils.io_utils.CocktailMenuReader method) read_mso_classification() (polo.utils.io_utils.MsoReader static method) Reagent (class in polo.crystallography.cocktail) recent_files() (polo.widgets.run_organizer.RunOrganizer property) refresh_run_after_update() (polo.widgets.run_organizer.RunOrganizer method) remove_run() (polo.widgets.run_organizer.RunOrganizer method) (polo.widgets.run_tree.RunTree method) remove_run_from_view() (polo.widgets.run_tree.RunTree method) remove_run_signal (polo.widgets.run_tree.RunTree attribute) reset_all() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) row_formater() (polo.utils.io_utils.MsoWriter static method) Run (class in polo.crystallography.run) run() (polo.threads.thread.ClassificationThread method) (polo.threads.thread.FTPDownloadThread method) (polo.threads.thread.QuickThread method) (polo.threads.thread.thread method) (polo.widgets.optimize_widget.OptimizeWidget property) (polo.widgets.plate_inspector_widget.PlateInspectorWidget property) (polo.widgets.plate_viewer.plateViewer property) (polo.widgets.slideshow_inspector.slideshowInspector property) (polo.widgets.slideshow_viewer.SlideshowViewer property) (polo.widgets.table_inspector.TableInspector property) (polo.widgets.table_viewer.TableViewer property) (polo.windows.run_updater_dialog.RunUpdaterDialog property)

run_model() (in module polo.marco.run_marco) run_name_validator() (in module polo.utils.io_utils) run_to_dict() (polo.utils.io_utils.XtalWriter method) RunCsvWriter (class in polo.utils.io_utils) RunDeserializer (class in polo.utils.io_utils) RunImporter (class in polo.utils.io_utils) RunImporterDialog (class in polo.windows.run_importer) RunLinker (class in polo.utils.io_utils) RunOrganizer (class in polo.widgets.run_organizer) RunSerializer (class in polo.utils.io_utils) RunTree (class in polo.widgets.run_tree) RunTreeItem (class in polo.widgets.run_tree) RunUpdaterDialog (class in polo.windows.run_updater_dialog)

S

save_log_file() (polo.windows.log_dialog.LogDialog method) save_recent_import_paths() (polo.widgets.run_organizer.RunOrganizer method) save_run_signal (polo.widgets.run_tree.RunTree attribute) saved_scalers (polo.crystallography.cocktail.UnitValue attribute) (polo.widgets.unit_combo.UnitComboBox attribute) scale() (polo.crystallography.cocktail.UnitValue method) scalers() (polo.widgets.unit_combo.UnitComboBox property) SceneExporter (class in polo.utils.io_utils) selected_brush (polo.widgets.plate_visualizer.PlateVisualizer attribute) selected_candidate() (polo.windows.run_importer.RunImporterDialog property) selected_classifications() (polo.widgets.plate_inspector_widget.PlateInspectorWidget property) (polo.widgets.slideshow_inspector.slideshowInspector property) (polo.widgets.table_inspector.TableInspector property) selected_constant() (polo.widgets.optimize_widget.OptimizeWidget property) selected_headers() (polo.widgets.table_inspector.TableInspector property) selected_run() (polo.widgets.run_tree.RunTree property) selection_dict() (polo.windows.run_importer.RunImporterDialog property) set_alt_image() (polo.widgets.slideshow_viewer.SlideshowViewer method) set_aspect_ratio_mode() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) set_cocktail_map() (polo.utils.io_utils.CocktailMenuReader class method) set_connection_status() (polo.windows.ftp_dialog.FTPDialog method) set_current_image_by_well_number() (polo.widgets.slideshow_viewer.SlideshowViewer method) set_default_titles() (polo.windows.pptx_dialog.PptxDesignerDialog method) set_formula_pos() (polo.utils.io_utils.CocktailMenuReader class method) set_from_string() (polo.crystallography.cocktail.UnitValue method) set_scene_colors_from_filters() (polo.widgets.plate_viewer.plateViewer method) set_scene_opacity_from_filters() (polo.widgets.plate_viewer.plateViewer method)

set_selected_block() (polo.widgets.plate_visualizer.PlateVisualizer method) set_value() (polo.widgets.unit_combo.UnitComboBox method) set_zero() (polo.widgets.unit_combo.UnitComboBox method) setPixmap() (polo.crystallography.image.Image method) setup_run_tree() (polo.windows.pptx_dialog.PptxDesignerDialog method) setup_view() (polo.widgets.plate_visualizer.PlateVisualizer method) show() (polo.windows.image_pop_dialog.ImagePopDialog method) show_alt_image() (polo.windows.image_pop_dialog.ImagePopDialog method) show_current_plate() (polo.widgets.plate_inspector_widget.PlateInspectorWidget method) show_error_message() (polo.windows.spectrum_dialog.SpectrumDialog method) show_image() (polo.windows.image_pop_dialog.ImagePopDialog method) Slide (class in polo.widgets.slideshow_viewer) slide_title_formater (polo.utils.io_utils.PptxWriter attribute) slideshowInspector (class in polo.widgets.slideshow_inspector) SlideshowViewer (class in polo.widgets.slideshow_viewer) sort_available_runs_by_date() (polo.windows.time_res_dialog.TimeResDialog method) sort_images_by_cocktail_number() (polo.widgets.slideshow_inspector.slideshowInspector static method) sort_images_by_marco_confidence() (polo.widgets.slideshow_inspector.slideshowInspector static method) sort_images_by_well_number() (polo.widgets.slideshow_inspector.slideshowInspector static method) sort_runs_by_spectrum() (polo.utils.io_utils.PptxWriter method) sorted_scalers() (polo.widgets.unit_combo.UnitComboBox property) SpectrumDialog (class in polo.windows.spectrum_dialog) standard_filter() (polo.crystallography.image.Image method) stock_volume() (polo.crystallography.cocktail.Reagent method) subgrid_dict (polo.widgets.plate_viewer.plateViewer attribute) subtitle() (polo.windows.pptx_dialog.PptxDesignerDialog property) suggest_links() (polo.windows.spectrum_dialog.SpectrumDialog method)

T

table_data() (polo.widgets.table_viewer.TableViewer property) TableInspector (class in polo.widgets.table_inspector) TableViewer (class in polo.widgets.table_viewer) test_for_working_unrar() (in module polo.utils.unrar_utils) the_big_link() (polo.utils.io_utils.RunLinker static method) thread (class in polo.threads.thread) tile_images_onto_scene() (polo.widgets.plate_viewer.plateViewer method)

TimeResDialog (class in polo.windows.time_res_dialog) title() (polo.windows.pptx_dialog.PptxDesignerDialog property) to_base() (polo.crystallography.cocktail.UnitValue method) to_graphics_scene() (polo.crystallography.image.Image class method) toggleDragMode() (polo.widgets.slideshow_viewer.PhotoViewer method) total_pages() (polo.widgets.plate_viewer.plateViewer property) total_slides() (polo.widgets.slideshow_viewer.SlideshowViewer property)

U

unit_combobox_text() (polo.widgets.unit_combo.UnitComboBox property) unit_text_parser() (polo.widgets.unit_combo.UnitComboBox method) UnitComboBox (class in polo.widgets.unit_combo) units (polo.crystallography.cocktail.Reagent attribute) UnitValue (class in polo.crystallography.cocktail) unlink_runs_completely() (polo.utils.io_utils.RunLinker static method)

unload_all_pixmaps() (polo.crystallography.run.Run method) unrar_archive() (in module polo.utils.unrar_utils) update_interface() (polo.widgets.optimize_widget.OptimizeWidget method) update_slides_from_filters() (polo.widgets.slideshow_viewer.SlideshowViewer method) update_table_view() (polo.widgets.table_inspector.TableInspector method) updated_run_signal (polo.windows.run_updater_dialog.RunUpdaterDialog attribute) username() (polo.windows.ftp_dialog.FTPDialog property)

V

validate_selection() (polo.windows.spectrum_dialog.SpectrumDialog method) validate_user_selection() (polo.windows.time_res_dialog.TimeResDialog method)

value() (polo.crystallography.cocktail.UnitValue property) view_dims() (polo.widgets.plate_viewer.plateViewer property)

W

well_assignment() (polo.crystallography.cocktail.Cocktail property) well_index_to_subgrid() (polo.widgets.plate_viewer.plateViewer static method) well_volume() (polo.widgets.optimize_widget.OptimizeWidget property) wheelEvent() (polo.widgets.plate_viewer.plateViewer method) (polo.widgets.slideshow_viewer.PhotoViewer method) width() (polo.crystallography.image.Image method) write() (polo.utils.io_utils.SceneExporter method) write_complete_run() (polo.utils.io_utils.HtmlWriter method) write_csv() (polo.utils.io_utils.RunCsvWriter method)

write_from_bites() (polo.crystallography.image.Image method) write_grid_screen() (polo.utils.io_utils.HtmlWriter method) write_image() (polo.utils.io_utils.SceneExporter static method) write_images() (polo.utils.io_utils.XtalToImages method) write_json() (polo.utils.io_utils.JsonWriter method) write_mso_file() (polo.utils.io_utils.MsoWriter method) write_screen_html() (in module polo.utils.io_utils) write_xtal_file() (polo.utils.io_utils.XtalWriter method) write_xtal_file_on_thread() (polo.utils.io_utils.XtalWriter method)

X

x_reagent() (polo.widgets.optimize_widget.OptimizeWidget property) x_step() (polo.widgets.optimize_widget.OptimizeWidget property) x_wells() (polo.widgets.optimize_widget.OptimizeWidget property) XmlReader (class in polo.utils.io_utils)

xtal_header() (polo.utils.io_utils.XtalWriter property) xtal_header_reader() (polo.utils.io_utils.RunDeserializer method) xtal_to_run() (polo.utils.io_utils.RunDeserializer method) XtalToImages (class in polo.utils.io_utils) XtalWriter (class in polo.utils.io_utils)

Y

y_reagent() (polo.widgets.optimize_widget.OptimizeWidget property)

y_step() (polo.widgets.optimize_widget.OptimizeWidget property) y_wells() (polo.widgets.optimize_widget.OptimizeWidget property)